ResearchResearch paperEfficiency & Inference · Large Language Models · Training & Scaling1 source · Oct 9, 2026

Your Discrete Graph Diffusion Model is Secretly Memorizing

Discrete graph diffusion models (GDMs) corrupt the graph structure by adding noise independently to nodes and edges under a Markovian noise model.

Key points

  • In the unconditional setting without node features, an equivariant denoiser trained on a single graph is able to generate novel graphs and sample-level metrics such as edge overlap and WL kernel similarity find no evidence of memorization.
  • In this work, we challenge this view and show for the first time that graph diffusion models indeed exhibit memorization.
  • Analyzing the reverse diffusion trajectories of GDMs trained on two-block stochastic block models (SBMs), we find a strong train-data bias: the model recovers a corrupted training graph almost perfectly compared to a held-out test graph.
  • We term this conditional memorization, as it surfaces only when the reverse trajectory is conditioned on a corrupted training graph and is not apparent during inference.

Sources (1)

  • [1]Your Discrete Graph Diffusion Model is Secretly Memorizing
    arXiv (AI, ML, NLP, CV, robotics, multi-agent) · Oct 9, 04:04 PM
    Discrete graph diffusion models (GDMs) corrupt the graph structure by adding noise independently to nodes and edges under a Markovian noise model.
    In the unconditional setting without node features, an equivariant denoiser trained on a single graph is able to generate novel graphs and sample-level metrics such as edge overlap and WL kernel similarity find no evidence of memorization.

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